Automated 3D gene position analysis
© 2017 by Mariamawit
This plugin allows batch processing of 3D FISH confocal images in order to calculate distances of FISH signals to nuclear periphery, the nucleolus and the chromocenters.
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Description

This plugin allows batch processing of 3D FISH confocal images in order to calculate distances of FISH signals to nuclear periphery, the nucleolus and the chromocenters. This plugin is written in python and should used with the XTFISHInsideNucleus_Parmaeters.csv. For more information on this plugin, please consult the XTFISHInsideNucleus_Manual.pdf

Requirements

Imaris version(s): 8.3.0
Necessary Modules: Imaris, ImarisXT

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Marjolijn Mertz Hi Mariamawit,

We tried this Xtension with Imaris 8.4 and 9. Unfortunately it does not run while other python plugins do. Could you please help us to figure out what the problem is?

Thank you very much,

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Mariamawit Hello Marjolijn,
I apologies for the late reply. If you have not figured out the issue yet, it is probably a package issue. Please make sure that the following python packages are installed on your computer:
numpy, pandas , logging, tkMessageBox, os, Tkinter
Please let me know if this helps.

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